Shopify QuickBooks Integration
We make Shopify accounting as easy as...
Sync Shopify payout data with QuickBooks on autopilot
Get clean summaries of your sales, fees, VAT and more by payout period
Have confidence that your Shopify bookkeeping in QuickBooks is accurate
Trusted by thousands of Shopify sellers
Link My Books automates the entire Shopify bookkeeping process. Whether you’re using Shopify Payments, PayPal, Klarna, Clearpay or any other payment gateway - we’ve got you covered.
Xero App Store
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QuickBooks App Store
If you’re spending more than 10 minutes per month on bookkeeping, you’re 
wasting time
With Link My Books' Shopify QuickBooks integration, Shopify sellers can avoid the common mistakes typically encountered, including overpaying VAT.
Shopify accounting doesn't have to be time consuming
As an ecommerce business owner your time is better spent on tasks that will help you grow your brand.
Link My Books helps you save time and money by automating your Shopify accounting.
Shopify Payments in, clean summaries out
Each time you receive a payout from Shopify Payments, Link My Books generates a clean summary invoice breaking down all the sales, refunds, fees and most importantly the VAT.
This invoice matches exactly the deposit you received into the bank making reconciliation a single-click task.
Support for PayPal, Klarna, Clearpay & more
Weekly or monthly summary invoices break down your sales and refunds from any other payment processor you have connected to your Shopify account.
Having accurate bookkeeping on autopilot will not only save you time each month but there's also a chance it will lower your VAT bill too.
There's no room for human error in tax efficiency
However you decide to do your Shopify accounting you need to be sure that your books are accurate to ensure you are growing your Shopify business in the most tax efficient way possible.
Since 2018 we've worked with 8,000+ e-commerce sellers and we've found that upwards of 75% of them are making some form of accounting mistake.
These mistakes can ultimately lead to you getting your VAT returns wrong and paying too much or too little tax, both of which can land you in hot water.
Why automate your Shopify accounting?
5 reasons why you should choose us
All Shopify Payment Gateways Supported
VAT/ GST/ Sales Tax - We Know them All
Loved by QuickBooks Users
Value for Money
Secure
Amazing Support
Enjoy peace of mind with expert support
With 1:1 onboarding calls, live chat and email support plus easy to follow step by step guides and video tutorials - we will help you to get your Link My Books account set up in minutes so that you can save hours each and every month.
“I asked quite a random question and I received a swift response from Deborah, which was extremely helpful and demonstrated how knowledgeable the support team are.”
We’re experts in Shopify and accounting
Our team is made up of ex 7 figure sellers and accountants. We know that accounting may not be your favourite task each month or even one that you’re 100% confident on. If you have a question - we’ll have the answer.
“The set up was very easy and quick. On top of that you get a 5* customer service, Rachel is brilliant, she responded to all my requests in a short time, she was knowledgeable, efficient and quick.”
“I asked quite a random question and I received a swift response from Deborah, which was extremely helpful and demonstrated how knowledgeable the support team are.”
“The set up was very easy and quick. On top of that you get a 5* customer service, Rachel is brilliant, she responded to all my requests in a short time, she was knowledgeable, efficient and quick.”
Looking for a specialist Shopify accountant for your business?
Well, you're in luck. Link My Books works with some of the leading ecommerce accounting specialist firms across the UK, US, Canada and Australia.
Trustworthy and knowledgeable Shopify seller Accountants
To become a Link My Books approved Shopify accountant our partners must demonstrate:
You can rely on the advice of our specialist ecommerce accountant experts
How to integrate Shopify with QuickBooks
Step 1: Start a free trial
Simply sign in using your QuickBooks account - that’s it!
Step 2: Connect your Shopify store
We’re an Approved Shopify App and only need read-only access to your store.
Step 3: Confirm your setup
We’ll suggest some sensible defaults for you based on our vast experience working with thousands of sellers and accountants.
Step 4: Automate your Shopify accounting
Accurate accounting on autopilot - what more could you want?
Frequently asked questions
Which Shopify regions do you support?
All of them! Link My Books works with Shopify stores from any country for simplified Shopify bookkeeping.
Which bookkeeping platforms do you integrate with?
We integrate directly with both Xero and QuickBooks Online. See how easy it is to connect Shopify to Xero with Link My Books the Link My Books Shopify Integration.
Do you support all Shopify Payment Gateways?
Yes! We support Shopify Payments plus all other Shopify payment gateways such as PayPal, Klarna, Clearpay, Mollie, Afterpay and hundreds more.
Can I add more than 1 Shopify account?
Yes! Our Pro and Premium plans allow you to add up to 5 or 10 Amazon, eBay, Shopify and Etsy accounts. If you have 2 Shopify stores for example, you would need a plan that includes 2 sales channels.
Is this accounting software compatible with Shopify?
Yes, 100%. We built Link My Books from the ground up to make it compatible and easy to use for any Shopify seller. From the guided set-up wizard to a clear view of pay-outs, it just makes this level of accountancy easier.
How far back can I go in terms of settlement history?
Link My Books imports the last 90 days of settlements as standard during your free trial. Once you subscribe to a paid plan you can go back up to 24 months depending on your plan.
Can I link my Shopify to Xero or QuickBooks?
One click is all it takes to get going. Just look at our Xero and QuickBooks reviews from verified customers to see how easy they have found it can be.
Can I add my accountant as a user?
Yes! You can add additional users to your account and your accountant is definitely a good choice. You may find that your accountant already uses Link My Books with other clients too, so ask them about us.
Can you help me set up my account?
Yes! Although we can’t give any type of tax or accounting advice, we can help you or your accountant to set up Link My Books exactly as you want to. All plans include a free bookable onboarding call, where a member of our team will help you get set up.
I have VAT registrations in several EU countries . Can you handle that?
Yes! The Link My Books Guided Tax Wizard will set you up in minutes regardless of how many VAT registrations you hold. If you get stuck, we can help too, especially if you're confused about paying VAT on Shopify fees.
I sell a mixture of Standard, Reduced and Zero rated goods. Can you handle that?
Yes! Link My Books has a product grouping feature allowing you to apply different tax rules to different groups of products.
I'm an accountant. Is this right for me?
Yes! Link My Books is already working with hundreds of accounting firms with e-commerce clients, helping them to reduce the workload for bookkeeping.
Do you support Australian GST too?
Yes! We have hundreds of Australian businesses and Australian Accountants using Link My books. We separate domestic and export sales automatically and help you apply the correct GST rates using our proprietary Tax Wizard.
I'm a US based business, will this work for me?
Yes, we have hundreds of US-based businesses and accountants using Link My Books to streamline their bookkeeping. The figures posted to your bookkeeping system by Link My Books will match your 1099-K statements too.
Start accurately accounting for your Shopify sales
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